Publications

K Bohn-Wippert, EN Tevonian, MR Megaridis, and RD Dar (2017) Similarity in viral and host promoters couples viral reactivation with host cell migration Nature Communications 8:15006. doi:10.1038/ncomms15006.

RD Dar, SM Shaffer, A Singh, BS Razooky, ML Simpson, A Raj, and LS Weinberger (2016) Transcriptional bursting explains the noise-versus-mean relationship in mRNA and protein levels PLoS ONE 11(7): e0158298. doi:10.1371/journal.pone.0158298.

RD Dar, BS Razooky, LS Weinberger, CD Cox, and ML Simpson (2015) The low noise limit in gene expression. PLoS ONE 10(10): e0140969. doi:10.1371/journal.pone.0140969.

RD Dar, NN Hosmane, MR Arkin, RF Siliciano, and LS Weinberger (2014) Screening for noise in gene expression identifies drug synergies. Science 44:1392–1396.

D Boehm, V Calvanese, RD Dar, S Xing, S Schroeder, L Martins, K Aull, P Li, V Planelles, JE Bradner, M Zhou, RF Siliciano, LS Weinberger, E Verdin, and M Ott (2012) BET bromodomain-targeting compounds reactivate HIV from latency via a Tat-independent mechanism. Cell Cycle 2:452–462.

MW Teng*, C Bolovan-Fritts*, RD Dar, A Womack, T Shenk, ML Simpson, and LS Weinberger (2012) An endogenous accelerator for viral gene expression provides a fitness advantage. Cell 151:1569–1580.

RD Dar*, BS Razooky*, A Singh, TV Trimeloni, JM McCollum, CD Cox, ML Simpson, and LS Weinberger (2012) Transcriptional burst frequency and burst size are equally modulated across the human genome. Proc Na. Acad Sc. USA 109:17454–17459.

A Singh, BS Razooky, RD Dar, and LS Weinberger (2012) Dynamics of protein noise can distinguish between alternative sources of gene-expression variability. Mol Syst Biol 8:607..

DK Karig, P Siuti, RD Dar, ST Retterer, MJ Doktycz, and ML Simpson (2011) Model for biological communication in a nanofabricated cell-mimic driven by stochastic resonance. Nano Comm Net 2:39–49.

RD Dar, DK Karig, JF Cooke, CD Cox, and ML Simpson (2010) Distribution and regulation of stochasticity and plasticity in Saccharomyces cerevisiae. Chaos 20:037106.

ML Simpson, CD Cox, MS Allen, JM McCollum, RD Dar, DK Karig, and JF Cooke (2009) Noise in Biological Circuits. In WIREs Nanomed Nanobiotechnol 1: 214–225.

LS Weinberger*, RD Dar*, and ML Simpson (2008) Transient mediated fate-determination in a transcriptional circuit of HIV. Nature Genetics 40:466–470.

CD Cox, JM McCollum, MS Allen, RD Dar, and ML Simpson (2008) Using noise to probe and characterize gene circuits. Proc Nat Acad Sci USA 105:10809–10814.

DW Austin, MS Allen, JM McCollum, RD Dar, JR Wilgus, GS Sayler, NF Samatova, CD Cox, and ML Simpson (2006) Gene network shaping of inherent noise spectra. Nature 439:608–11.

CD Cox, JM McCollum, DW Austin, MS Allen, RD Dar, and ML Simpson (2006) Frequency domain analysis of noise in simple gene circuits. Chaos 16:026102.

*Denotes equal contribution.